This site is managed by Brian Golding. Note that entries are
retained for only thirty days. Currently only
GBE,
JME,
MBE,
and PNAS (selected articles),
are provided.
| Apr 17 20:00 | When sexual selection through mate choice depletes versus exaggerates genetic variation: Unraveling the lek paradox - Kuangyi Xu, et al. (PNAS)
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| Apr 17 08:00 | Proceedings of the National Academy of Sciences: Evolution - (PNAS)
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| Apr 16 20:26 | Replication Rate-Information Storage Trade-Off Shapes Genome Architecture Across Domains - Parthasarathi Sahu, et al. (JME)
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| Apr 16 20:26 | Mapping Patterns of G-Quadruplex-Forming Sequence Conservation in Primates - Emilyane de Oliveira Santana Amaral, et al. (JME)
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| Apr 16 20:00 | Compositional memory matters for early molecular systems - Barnabe Ledoux, et al. (PNAS)
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| Apr 16 20:00 | Constrained evolutionary funnels shape viral immune escape - Marian Huot, et al. (PNAS)
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| Apr 15 18:10 | Evidence for strong purifying selection of human 47S ribosomal RNA genes - Xufan Ma, et al. (PNAS)
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| Apr 15 18:10 | Recurrent mutations drive rapid HIV escape from two broadly neutralizing antibodies in vivo - Elena V. , et al. (PNAS)
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| Apr 14 16:00 | Habitat-specific temporal variation in the pace of fish diversification - Nick Peoples, et al. (PNAS)
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| Apr 14 16:00 | Cooperative traits maintain bacterial niche breadth - Shryli K. , et al. (PNAS)
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| Apr 13 18:03 | The use of dN/dS ratios to investigate types of selection in related sexual and asexual lineages
by Finn L Klemp and others
(GBE)
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| Apr 13 18:03 | Snakes (Colubridae: Erythrolamprus) with a complex toxic diet show convergent yet highly heterogeneous voltage-gated sodium channel evolution
by Valeria Ramírez-Castañeda and others
(GBE)
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| Apr 13 18:03 | Patterns of conservation and loss of Hox genes in xenacoelomorph lineage since divergence from last common bilaterian ancestor
by Ariane Buckenmeyer and others
(GBE)
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| Apr 13 18:03 | AliFilter: a Machine Learning Approach to Alignment Filtering
by Giorgio Bianchini and others
(MBE)
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| Apr 13 18:03 | Benchmarking imputation accuracy in the presence or absence of a reference panel
by Alexandros Topaloudis and others
(MBE)
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| Apr 13 18:03 | Comparative phenotypic analysis of rhodopsin supports stepwise evolution of dim-light vision in early vertebrates
by Yimeng Cui and others
(MBE)
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| Apr 13 18:03 | Phylogenomic mixture models outperform homogeneous and partitioned models
by Davide Pisani and others
(MBE)
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| Apr 13 18:03 | Pangolin museum genomics reveal the dynamic genetic consequences and extinction risk of the critically endangered Chinese pangolin
by Jing Yang Hu and others
(MBE)
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| Apr 12 00:03 | Transgenerational effects of heat shock on gene regulation and fitness-related traits in natural Drosophila populations
by Ewan Harney and Josefa González
(MBE)
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| Apr 12 00:03 | Wnt signaling patterns a central-peripheral body axis in the early-diverging metazoanTrichoplax adhaerens
by Guotao Di and others
(MBE)
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| Apr 12 00:03 | Deep Learning Reveals Genomic Regions Introgressed between Two Recurrently Hybridizing Lynx Species
by Enrico Bazzicalupo and others
(MBE)
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| Apr 12 00:03 | Big Spider, Big Genome: Chromosome-level genome of a North American tarantula (Aphonopelma marxi) and comparative genomics across 300 million years of spider evolution
by Ethan J Briggs and others
(GBE)
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| Apr 11 12:00 | Cellular remodeling of ovarian follicular epithelial cells transmits an obligate nutritional endosymbiont in a scale insect - Ojaswini Sourajyoti , et al. (PNAS)
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| Apr 11 12:00 | Coalescence and translation: A language model for population genetics - Kevin Korfmann, et al. (PNAS)
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| Apr 10 18:03 | A new super-pangenome pipeline reveals domestication signatures of conserved noncoding sequences in the orange subfamily
by Lei Tan and others
(MBE)
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| Apr 10 18:03 | Revealing deep evolutionary relationships between RNA viruses using predicted structural models of viral RNA polymerases
by Heli A M Mönttinen and others
(MBE)
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| Apr 10 18:03 | Integrated conjugative elements drive the formation of pandemic clones of Escherichia coli with hybrid chromosomes
by Talía Berruga-Fernández and others
(MBE)
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| Apr 10 18:03 | A key regulator of missing-self innate immunity is polymorphic and under diversifying selection
by Rocco F Notarnicola and others
(MBE)
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| Apr 10 18:03 | Conservation and divergence of sex-biased gene expression across 50 million years of Drosophila evolution
by Amanda Glaser-Schmitt and John Parsch
(MBE)
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| Apr 10 12:00 | Resolving competing evolutionary histories in joint ancestral state reconstruction - James D. , et al. (PNAS)
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| Apr 9 21:03 | Empirical Validation of the Nearly Neutral Theory at Divergence and Population-Genomic Scales Using 144 Placental Mammal Genomes
by Mélodie Bastian and others
(GBE)
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| Apr 9 12:00 | Chromosome-specific drift under stabilizing selection generates polygenic barriers to sex chromosome turnover - Pavitra Muralidhara, et al. (PNAS)
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| Apr 8 18:03 | Bridging Micro- and Macroevolution: Phylogenomic Evidence for the Nearly Neutral Theory in Mammals
by Haoran Cai
(GBE)
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| Apr 7 21:03 | Characterization of hairpin loops and cruciforms across 118,019 genomes spanning the tree of life
by Nikol Chantzi and others
(GBE)
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| Apr 7 12:00 | The fitness costs of reproductive specialization scale inversely with organismal size - Christopher Zhang, et al. (PNAS)
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| Apr 7 12:00 | The central dogma in reverse - Natalia Mrnjavac, et al. (PNAS)
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| Apr 7 12:00 | An insect that cooperates like bacteria - Stuart A. , et al. (PNAS)
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| Apr 6 21:03 | Complex patterns of hitchhiking mutation load among stickleback populations
by Jana Nickel and others
(GBE)
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| Apr 6 21:03 | Detecting positive selection by modeling structure within images of genetic variation
by Md Ruhul Amin and others
(GBE)
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| Apr 5 21:03 | Genetic Footprints of Seasonal Fluctuating Selection: A Comparison with Established Selection Forms
by Olivia L Johnson and others
(GBE)
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| Apr 5 21:03 | Evolutionary complexity of primate immune system uncovered by the extensive phylogenomic sampling
by Xiuping Zhang and others
(GBE)
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| Apr 5 00:03 | Genome Science at the Forefront of Biodiversity's Greatest Challenges: GBE Virtual Collection on Conservation Genomics
by Pedro Andrade
(GBE)
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| Apr 4 00:03 | Dynamics of Expression Variability Contribute to Retention of Small-Scale vs. Whole-Genome Duplicates
by Haoran Cai and David L Des Marais
(GBE)
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| Apr 3 12:00 | Cultural tightness and social cohesion under coevolving beliefs, behaviors, and preferences - Filippo Zimmaro, et al. (PNAS)
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| Apr 3 12:00 | Helper-exploiter polymorphism with ecological inheritance - Olof Leimara, et al. (PNAS)
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| Apr 2 12:00 | Non-ergodicity in ecology and evolution - Teemu Kuosmanen, et al. (PNAS)
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| Apr 2 12:00 | Descent from a common ancestor restricts exploration of protein sequence space - Lada H. , et al. (PNAS)
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| Mar 31 00:00 | Divergence of ontogenetic dietary shifts in adaptive radiation - Grégoire Saboret, et al. (PNAS)
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| Mar 30 18:03 | Replicated hybrid zones reveal genomic patterns of local adaptation and introgression in spruce
by Gabriele Nocchi and others
(MBE)
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| Mar 30 00:03 | De novo chromosome-level assembly of the endangered Pilocarpus microphyllus highlights genomic resources for conservation and sustainable pilocarpine extraction
by Mariane Brom Sobreiro and others
(GBE)
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| Mar 30 00:03 | Age-dependent phylodynamics with application to single-cell lineage trees
by Nicola Mulberry and others
(MBE)
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| Mar 28 18:03 | Structural Constraints Acting on the SARS-CoV-2 Spike Protein Reveal Limited Space for Viral Adaptation
by James C Herzig and others
(GBE)
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| Mar 28 18:03 | Genome sequence data reveal complex and variable ploidy in the amoebozoan Acanthamoeba castellanii
by Morgan J Colp and John M Archibald
(GBE)
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| Mar 28 18:03 | Evolutionary trajectories, early diversification and species-specific amplification of the metazoan Inhibitor of Apoptosis (IAP) repertoire
by Mélanie Ribeiro Lopes and others
(MBE)
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| Mar 28 18:03 | Ancient origin and dynamic evolution of bivalent spider toxins
by Robin A Araya and others
(MBE)
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| Mar 28 18:03 | Genomic erosion across avian lineages in the context of their evolutionary history
by Xuejing Wang and others
(MBE)
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| Mar 28 00:03 | Evolutionary Dynamics of Gene Expression During Thermal Adaptation in Drosophila subobscura
by Marta A Antunes and others
(GBE)
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| Mar 28 00:03 | Signatures of Innovation and Selection in the Extremotolerant Yeast Kluyveromyces marxianus
by Kaylee E Christensen and others
(GBE)
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| Mar 28 00:03 | The Missing Piece: Functional Telomerase Restored in the Beetle Model
by Petr Fajkus and others
(GBE)
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| Mar 28 00:03 | Identifying adaptive footprints in the presence of demographic uncertainty
by Sandipan Paul Arnab and others
(GBE)
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| Mar 28 00:03 | Cosmopolitan gene families with known functions are hotspots for the evolution of novel genes in stony corals
by Timothy G Stephens and others
(GBE)
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| Mar 28 00:03 | Phage toxin variants are linked to protection specificity in a defensive symbiont
by Balig Panossian and others
(MBE)
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| Mar 28 00:00 | Ecological speciation in allopatry is rooted in older divergence - Andrew D. , et al. (PNAS)
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| Mar 28 00:00 | Reply to MacColl: Repeated evolution from standing genetic variation - Marius Roesti, et al. (PNAS)
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| Mar 27 00:00 | Large future genetic diversity losses are predicted from conservation indicators even with habitat protection - Kristy S. , et al. (PNAS)
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| Mar 26 18:03 | WASTER: Practical de novo phylogenomics from low-coverage short reads
by Chao Zhang and Rasmus Nielsen
(MBE)
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| Mar 26 18:03 | Reshaping Organellar Translation and tRNA Metabolism: The Consequences of Photosynthesis Loss and Massive Horizontal Gene Transfer
by Luis Federico Ceriotti and others
(MBE)
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| Mar 26 00:00 | DNA methylation site loss for plasticity-led novel trait genetic fixation - Takafumi Katsumura, et al. (PNAS)
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| Mar 25 15:03 | Highlight: Ancient oceans, New skeletons innovations in silicon transport shaped sponge skeletal evolution
by Ioanna Kotari
(MBE)
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| Mar 24 20:00 | Archaeogenetic insights into the demographic history of Late Neanderthals - Charoula M. , et al. (PNAS)
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| Mar 24 20:00 | Rethinking same-sex sexual behavior: From sensory error to social function - Viraj R. , et al. (PNAS)
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| Mar 24 20:00 | Correction for Sun et al., The Japanese Archipelago sheltered cave lions, not tigers, during the Late Pleistocene - (PNAS)
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| Mar 23 18:03 | Caution in Interpreting Regulatory RNA Associations With Eusocial Evolution in Bees
by Petr Heneberg
(GBE)
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| Mar 23 18:03 | Regulatory RNA Patterns Associated with Bee Evolution Should Be Interpreted with Caution, but Correlational Studies Should Not Be Entirely Dismissed
by Dova Brenman-Suttner and Amro Zayed
(GBE)
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| Mar 23 18:03 | Response of protein coding genes and microRNAs to temperature changes in four species of drosophilids
by Stacey S K Tsang and others
(GBE)
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| Mar 22 18:03 | Endoparasitoids at Odds: Not All Rely on Viral Domestication
by Shady A Kuster
(GBE)
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| Mar 22 18:03 | Haplotype-resolved genome of the critically endangered, paleo-endemic tree, Eidothea hardeniana
by Abhishek Soni and others
(GBE)
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| Mar 21 20:00 | Insights into cephalochordate genome and gene evolution from the early-diverging amphioxus Asymmetron lucayanum - Yifan Ren, et al. (PNAS)
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| Mar 21 20:00 | Quantitative system drift - Carl Veller, et al. (PNAS)
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| Mar 20 20:00 | Bird dispersal of fruit-like yam bulbils: Is this a new form of Batesian mimicry? - Kenji Suetsugu, et al. (PNAS)
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| Mar 20 20:00 | Completeness as a fitness landscape for cognitive architectures - Pier Luigi , et al. (PNAS)
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| Mar 20 20:00 | Reply to Suetsugu and Johnson: Bird dispersal of berry-like yam bulbils is consistent with Batesian mimicry under low receiver cost - Guillaume Chomicki, et al. (PNAS)
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| Mar 20 20:00 | Reply to Sacco: Complete spaces as outcomes of evolutionary optimization - Philip La, et al. (PNAS)
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| Mar 19 18:03 | Pressure-tolerant evolution in rhodopsin of deep-diving whales
by Hayate Takeuchi and Takashi Hayakawa
(GBE)
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| Mar 19 18:03 | Lifespan Predicts Mitochondrial Substitution Rates Across Vertebrates, but Methodology Matters
by Jess E Sterling and others
(GBE)
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| Mar 19 16:00 | A population threshold for dedicated teaching - Hirotaka Goto, et al. (PNAS)
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| Mar 19 16:00 | Imported, not invented, genes prevail among Escherichia coli ORFans - Md. Hassan uz-, et al. (PNAS)
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| Mar 19 16:00 | Nudibranch color diversity shares a common physical basis in guanine photonic structure 'pixels' - Samuel Humphrey, et al. (PNAS)
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| Mar 19 16:00 | Origin of eukaryotic plasmalogen biosynthesis by horizontal gene transfer from myxobacteria - Juan Manuel , et al. (PNAS)
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